Annotation of gnutrition/gnutrition.texi, revision 1.1

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        !             5: @ifnottex
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        !             8: @node Top
        !             9: @titlepage
        !            10: @title GNUtrition
        !            11: @subtitle Version 0.33rc1
        !            12: @subtitle $Id: gnutrition.texi,v 1.4 2026/05/08 22:26:25 asm Exp $
        !            13: @author @uref{https://antonm.org/, Anton McClure} @email{asm@@gnu.org, <asm@@gnu.org>}
        !            14: @author Edgar Denny
        !            15: @author Ian Haywood
        !            16: @end titlepage
        !            17: 
        !            18: @ifhtml
        !            19: Version 0.33rc1
        !            20: @*
        !            21: $Id: gnutrition.texi,v 1.4 2026/05/08 22:26:25 asm Exp $
        !            22: 
        !            23: @uref{https://antonm.org/, Anton McClure} @email{asm@@gnu.org, <asm@@gnu.org>}
        !            24: @*
        !            25: Edgar Denny
        !            26: @*
        !            27: Ian Haywood
        !            28: @html
        !            29: <hr>
        !            30: @end html
        !            31: @end ifhtml
        !            32: 
        !            33: @menu
        !            34: * Introduction::
        !            35: * The Main Window::
        !            36: * The Main GUI Window::
        !            37: * The Nutrients in GNUtrition::
        !            38: * GNU Free Documentation License::
        !            39: * Bibliography::
        !            40: @end menu
        !            41: 
        !            42: @node Introduction
        !            43: @chapter Introduction
        !            44: @anchor{#introduction}
        !            45: GNUtrition is a program designed to produce a detailed nutritional
        !            46: analysis of the human diet.
        !            47: 
        !            48: @menu
        !            49: * Downloading GNUtrition::
        !            50: * Running GNUtrition for the First Time::
        !            51: @end menu
        !            52: 
        !            53: @node Downloading GNUtrition
        !            54: @section Downloading GNUtrition
        !            55: @anchor{#downloading-gnutrition}
        !            56: GNUtrition is is freely available at
        !            57: @uref{http://www.gnu.org/software/gnutrition,www.gnu.org}. It is
        !            58: released under the GNU General Public Licence version 3 or later. See
        !            59: the file @code{LICENCE} for details.
        !            60: 
        !            61: @menu
        !            62: * Requirements::
        !            63: @end menu
        !            64: 
        !            65: @node Requirements
        !            66: @subsection Requirements
        !            67: @anchor{#requirements}
        !            68: GNUtrition requires the following packages:
        !            69: 
        !            70: Build-time
        !            71: 
        !            72: @itemize
        !            73: @item
        !            74: GNU Make
        !            75: 
        !            76: @item
        !            77: C compiler with C99 support (e.g., GCC)
        !            78: 
        !            79: @item
        !            80: ncurses development headers and library
        !            81: 
        !            82: @item
        !            83: sqlite3 development headers and library
        !            84: 
        !            85: @item
        !            86: libm (typically part of the C standard library on GNU/Linux)
        !            87: 
        !            88: @end itemize
        !            89: 
        !            90: Run-time
        !            91: 
        !            92: @itemize
        !            93: @item
        !            94: ncurses library
        !            95: 
        !            96: @item
        !            97: sqlite3 library
        !            98: 
        !            99: @item
        !           100: A USDA food database (@code{food.db}) built with @code{build_db.sh}
        !           101: 
        !           102: @end itemize
        !           103: 
        !           104: This list looks daunting, but all of these packages should be standard
        !           105: on modern Linux systems, but you may have to install SQLite separately.
        !           106: 
        !           107: @node Running GNUtrition for the First Time
        !           108: @section Running GNUtrition for the First Time
        !           109: @anchor{#running-gnutrition-for-the-first-time}
        !           110: Install the database used for food information first:
        !           111: 
        !           112: @verbatim
        !           113: $./build_db.sh
        !           114: @end verbatim
        !           115: 
        !           116: Then you can start GNUtrition for the command-line simply:
        !           117: 
        !           118: @verbatim
        !           119: $gnutrition
        !           120: @end verbatim
        !           121: 
        !           122: @menu
        !           123: * Entering your Information::
        !           124: @end menu
        !           125: 
        !           126: @node Entering your Information
        !           127: @subsection Entering your Information
        !           128: @anchor{#entering-your-information}
        !           129: The profile options give you the option to enter your age in years, your
        !           130: current height, your current weight, and your activity level. This is
        !           131: subject to change prior to GNUtrition 1.0.
        !           132: 
        !           133: @node The Main Window
        !           134: @chapter The Main Window
        !           135: @anchor{#the-main-window}
        !           136: The main window shows you a daily budget based on USDA recommendations,
        !           137: along with the following options
        !           138: 
        !           139: @itemize
        !           140: @item
        !           141: s @code{Search}
        !           142: 
        !           143: @item
        !           144: l @code{Log}
        !           145: 
        !           146: @item
        !           147: p @code{Profile}
        !           148: 
        !           149: @item
        !           150: q @code{Quit}
        !           151: 
        !           152: @end itemize
        !           153: 
        !           154: The search tool lets you search by food names and descriptions.
        !           155: 
        !           156: The log lets you view foods you add, and lets you edit those entries.
        !           157: 
        !           158: @node The Main GUI Window
        !           159: @chapter The Main GUI Window
        !           160: @anchor{#the-main-gui-window}
        !           161: At the top of the new main window is Search, Profile, and About.
        !           162: 
        !           163: Under that, you have both a daily budget based on USDA recommendations,
        !           164: along a daily food log.
        !           165: 
        !           166: The search window lets you search by food names and descriptions.
        !           167: 
        !           168: @node The Nutrients in GNUtrition
        !           169: @chapter The Nutrients in GNUtrition
        !           170: @anchor{#notes}
        !           171: This chapter contains some notes on the nutrients analysed by
        !           172: GNUtrition. They are not a definitive guide, for detailed information
        !           173: refer to a standard text of nutrition or dietetics.
        !           174: 
        !           175: @menu
        !           176: * Caveat::
        !           177: * Macro nutrients::
        !           178: * Vitamins::
        !           179: * Metals::
        !           180: * Amino acids::
        !           181: * Lipids::
        !           182: @end menu
        !           183: 
        !           184: @node Caveat
        !           185: @section Caveat
        !           186: @anchor{#caveat}
        !           187: When Ian was researching the information for the Recommended Daily
        !           188: Intakes (RDIs). he found the information conflicting but incomplete, so
        !           189: for some nutrients there may be a European value, a US value, and a UN
        !           190: value. In general, he chose the US value, in the hope this will be
        !           191: compatible with the database.
        !           192: 
        !           193: If you know of a good reference for RDIs, we would be eager to hear from
        !           194: you, mail us at
        !           195: @uref{mailto:bug-gnutrition@@gnu.org,bug-gnutrition@@gnu.org}
        !           196: 
        !           197: It also should be noted that RDIs are a @emph{guide} to nutrition, not
        !           198: the definition of it. Individuals may vary from the RDIs provided for
        !           199: many reasons. For example, active people need more energy and protein
        !           200: than inactive people, and illness increases the RDIs for almost
        !           201: everything.
        !           202: 
        !           203: In summary, just because the program spits out a nice column of
        !           204: ``100%'', that doesn't automatically mean you have a healthy diet. The
        !           205: old rules about balance and lots of green vegetables still apply, we're
        !           206: afraid.
        !           207: 
        !           208: @node Macro nutrients
        !           209: @section Macro nutrients
        !           210: @anchor{#macro-nutrients}
        !           211: Macro nutrients constitute the bulk of the food we eat, they provide
        !           212: energy and chemical building-blocks for tissues.
        !           213: 
        !           214: @table @asis
        !           215: @item Protein
        !           216: 
        !           217: Proteins consists of long chains of @ref{#acids,amino acids} , to which
        !           218: it is broken down to in the digestive system. Much of these amino acids
        !           219: are reconstituted by the body to form human proteins. Human proteins are
        !           220: universal in the body: as enzymes they regulate chemical reactions
        !           221: within cells and the blood, they form tendons and ligaments which hold
        !           222: the body together, and they provide muscle with its ability to contract.
        !           223: Excess protein can be converted to sugar by the liver.
        !           224: 
        !           225: @item Carbohydrate
        !           226: 
        !           227: consists of sugar, and chains of sugar molecules called starches.
        !           228: Starches are broken down in a similar manner to protein. In plants and
        !           229: bacteria, carbohydrates provide structure, but in animals they are used
        !           230: for energy.
        !           231: 
        !           232: @item Fat
        !           233: 
        !           234: consists of fatty acids (@ref{#lipids,lipids}), which are chain of
        !           235: carbon atoms with a acid group at the end. These fatty acids are linked
        !           236: in groups of three by glycerol. Once again,. this structure is broken
        !           237: down in the gut, only to be re-formed in fat cells. Some fatty acids
        !           238: have special functions, but mostly fat is a store of energy.
        !           239: 
        !           240: @item Alcohol
        !           241: 
        !           242: Rightfully a drug, but its energy component, between fat and protein,
        !           243: can be significant in some people. There is no recommended intake for
        !           244: alcohol, but their are recommended maximum intakes, these being 40g a
        !           245: day for men and 20g a day for women. @footnote{according to the Drug and
        !           246: Alcohol Centre, St. Vincent's Hospital, Melbourne, Australia.}
        !           247: 
        !           248: @item Energy
        !           249: 
        !           250: A total calculated from the above, which is expressed in both
        !           251: kilocalories (the traditional unit in chemistry), and kilojoules (the
        !           252: physicist's unit).
        !           253: 
        !           254: There is a base requirement for energy, which can be estimated by age
        !           255: and weight. However, muscle mass requires more energy to maintain than
        !           256: fat mass, so persons of the same weight can have widely different base
        !           257: energy requirements. In addition, active people will obviously need more
        !           258: energy.
        !           259: 
        !           260: @item Fibre
        !           261: 
        !           262: is indigestible by human enzymes, and is largely excreted, or digested
        !           263: by bacteria in the large intestine. Nevertheless, it is very important,
        !           264: and often deficient in first-world diets. It dilutes toxins that build
        !           265: up the gut and retains water. It softens faeces and increases its
        !           266: volume, making bowel motions more efficient. Deficiency causes
        !           267: constipation, and has been linked to bowel cancer.
        !           268: 
        !           269: @item Water
        !           270: 
        !           271: Arguably the most important nutrient, in terms of amount (two-thirds of
        !           272: the body), and essentiality (people die of thirst long before they
        !           273: starve).
        !           274: 
        !           275: @end table
        !           276: 
        !           277: @node Vitamins
        !           278: @section Vitamins
        !           279: @anchor{#vitamins}
        !           280: Vitamins are cofactors -- special molecules which support various
        !           281: biochemical reactions with in the body -- required only in very small
        !           282: amounts, and can be stored for extended periods. They are divided into
        !           283: two groups:
        !           284: 
        !           285: @menu
        !           286: * Fat-soluble vitamins::
        !           287: * Water-soluble vitamins::
        !           288: @end menu
        !           289: 
        !           290: @node Fat-soluble vitamins
        !           291: @subsection Fat-soluble vitamins
        !           292: @anchor{#fat-soluble-vitamins}
        !           293: @table @asis
        !           294: @item Vitamin A
        !           295: 
        !           296: is used for light-detecting chemicals in the retina of the eye, and
        !           297: maintaining proper skin moisture and softness. In deficiency, poor night
        !           298: vision, hard and rough skin, and anaemia can occur. Vitamin A is also an
        !           299: anti-oxidant and protects against cancer.
        !           300: 
        !           301: @item Vitamin D
        !           302: 
        !           303: regulates calcium. Deficiency leads to rickets (soft, malformed bones)
        !           304: in children. With adequate sunlight, the body can make its own vitamin
        !           305: D, so little or none is required by the diet. It is not included in the
        !           306: USDA database, and so not analysed by GNUtrition.
        !           307: 
        !           308: @item Vitamin E
        !           309: 
        !           310: is a strong anti-oxidant: it destroys cancer-causing chemicals called
        !           311: @@emph@{free radicals@}. No deficiency syndrome has been described.
        !           312: 
        !           313: @item Vitamin K
        !           314: 
        !           315: is used by the liver to make special proteins, which circulate in the
        !           316: blood. When a person is injured, these proteins. help to form a clot.
        !           317: Intestinal bacteria can make vitamin K, however, it is also required in
        !           318: the diet, but in low amounts. It is not included in the database.
        !           319: 
        !           320: @end table
        !           321: 
        !           322: @node Water-soluble vitamins
        !           323: @subsection Water-soluble vitamins
        !           324: @anchor{#water-soluble-vitamins}
        !           325: @table @asis
        !           326: @item Vitamin C
        !           327: 
        !           328: is used in making collagen, a tough protein that provides a ``glue''
        !           329: holding cells together. Vitamin C deficiency, known as @@emph@{scurvy@},
        !           330: leads to easy bruising and bleeding, as lack of collagen weakens blood
        !           331: vessels. It also aids the absorption of of iron, and may be an
        !           332: anti-oxidant.
        !           333: 
        !           334: It is not a cure for the common cold.
        !           335: 
        !           336: @item Vitamin B-1 (Thiamine)
        !           337: 
        !           338: is used in the biochemical processes by which cells obtain energy from
        !           339: sugar. Deficiency causes mental disturbance, clumsiness, and
        !           340: double-vision, which can occur in alcoholics, and in third-world
        !           341: countries.
        !           342: 
        !           343: @item Riboflavin; Niacin; Pantothenic acid
        !           344: 
        !           345: are also important in energy utilisation by cells, by forming parts of
        !           346: different enzymes. Niacin deficiency causes @@emph@{pellagra@},
        !           347: characterised to dermatitis, diarrhoea, and dementia.
        !           348: 
        !           349: @item Vitamin B-6 (pyridoxine)
        !           350: 
        !           351: is used for processing of amino acids, deficiency causes a type of
        !           352: anaemia.
        !           353: 
        !           354: @item Folate
        !           355: 
        !           356: is used for the synthesis of DNA. Deficiency leads to anaemia. In
        !           357: pregnant women, higher intakes protects against neural tube defects in
        !           358: their children.
        !           359: 
        !           360: @item Vitamin B-12
        !           361: 
        !           362: is also used for DNA synthesis, also leads to anaemia when deficient.
        !           363: Only available in animal sources, so strict vegans require
        !           364: supplementation.
        !           365: 
        !           366: @end table
        !           367: 
        !           368: @node Metals
        !           369: @section Metals
        !           370: @anchor{#metals}
        !           371: @table @asis
        !           372: @item Iron
        !           373: 
        !           374: is used mainly in haemoglobin, a chemical that binds oxygen in the
        !           375: blood, giving it its red colour. Deficiency, more common in women, leads
        !           376: to mild anaemia.
        !           377: 
        !           378: @item Calcium
        !           379: 
        !           380: is used mainly in bones, to provide mechanical strength. Low calcium
        !           381: intake has been linked to osteoporosis (weakening of the bones) in old
        !           382: people.
        !           383: 
        !           384: @item Selenium
        !           385: 
        !           386: is essential to an anti-oxidant enzyme, which works in a similar manner
        !           387: to Vitamin E.
        !           388: 
        !           389: @item Potassium; Sodium
        !           390: 
        !           391: are used to provide electrical potentials across nerve and muscle cell
        !           392: membranes, also to provide the necessary osmotic force in body fluids.
        !           393: Excess sodium was once linked to high blood pressure, but this not
        !           394: emphasised today.
        !           395: 
        !           396: @item Magnesium
        !           397: 
        !           398: is used in controlling nerve impulses, deficiency causes weakness and
        !           399: tremors.
        !           400: 
        !           401: @item Copper; Manganese; Zinc
        !           402: 
        !           403: combine with specific proteins to form various different enzymes.
        !           404: 
        !           405: @end table
        !           406: 
        !           407: @node Amino acids
        !           408: @section Amino acids
        !           409: @anchor{#acids}
        !           410: Amino acids are the breakdown products of proteins. They are divided
        !           411: into two groups, essential and non-essential:
        !           412: 
        !           413: @float Table
        !           414: @multitable {Phenylalanine} {Non-essential} 
        !           415: @headitem 
        !           416: Essential
        !           417:  @tab Non-essential
        !           418: @item 
        !           419: Histidine
        !           420:  @tab Glycine
        !           421: @item 
        !           422: Isoleucine
        !           423:  @tab Glutamate
        !           424: @item 
        !           425: Leucine
        !           426:  @tab Aspartate
        !           427: @item 
        !           428: Lysine
        !           429:  @tab Proline
        !           430: @item 
        !           431: Methionine
        !           432:  @tab Serine
        !           433: @item 
        !           434: Phenylalanine
        !           435:  @tab Alanine
        !           436: @item 
        !           437: Threonine
        !           438:  @tab Tryptophan
        !           439: @item 
        !           440: Tryptophan
        !           441:  @tab Arginine
        !           442: @item 
        !           443: Valine
        !           444:  @tab 
        !           445: @end multitable
        !           446: @caption{The Amino Acids}
        !           447: @end float
        !           448: Deficiency of any of the nine leads to wasting as proteins cannot be
        !           449: made without them. This usually only occurs with a very monotonous vegan
        !           450: diet, where the chief food is a plant that does not have one or more
        !           451: essential amino acid. A varied vegetarian diet solves the problem.
        !           452: 
        !           453: The other amino acids can be synthesised by the liver. The liver can
        !           454: also interchange two pairs: cysteine and methionine, and tyrosine and
        !           455: phenylalanine. This means a shortage of one can be made up from the
        !           456: other, so total as the total requirement is met.
        !           457: 
        !           458: Amino acid supplements are of no proven benefit over proteins containing
        !           459: the amino acids (but are much more expensive).
        !           460: 
        !           461: @node Lipids
        !           462: @section Lipids
        !           463: @anchor{#lipids}
        !           464: Lipids include fatty acids (breakdown products of fat) and cholesterol.
        !           465: 
        !           466: @table @asis
        !           467: @item Fatty acids
        !           468: 
        !           469: can be divided into three main groups: saturated @footnote{`saturation'
        !           470: in this sense refers to hydrogen. Ask an organic chemist.},
        !           471: mono-unsaturated and polyunsaturated. With these three the key is the
        !           472: @emph{ratio} -- lots of saturated fatty acids, relative to the others
        !           473: leads to atherosclerosis (hardening of the arteries).
        !           474: 
        !           475: Their specific chemical structures are available in organic chemistry or
        !           476: biochemistry textbooks, in general they consists of a vary chain of
        !           477: carbon-atoms, with a carboxylic acid group at one end.
        !           478: 
        !           479: Fatty acids are used to make certain types of hormones, as well as to
        !           480: store energy. Two fatty acids, linoleic and alpha-linoleic acid, are
        !           481: essential for humans.
        !           482: 
        !           483: @item Omega-3, and -6
        !           484: 
        !           485: Some fatty acids are referred as "omega-3" and "omega-6". This refers to
        !           486: the location of a double bond from the final (omega) carbon atom in the
        !           487: fatty acid.
        !           488: 
        !           489: It is believed that omega-3 fatty acids, found in fish oil, may have
        !           490: beneficial health effects, but there is little hard evidence for this.
        !           491: 
        !           492: @item Cholesterol
        !           493: 
        !           494: can be made by the liver, so there is little dietary need. When we eat
        !           495: cholesterol, the liver compensates by making less. Contrary to popular
        !           496: belief, dietary cholesterol seems to have little effect on
        !           497: blood-cholesterol levels, instead saturated fatty acids seem to be more
        !           498: important.
        !           499: 
        !           500: @item Phytosterols
        !           501: 
        !           502: Not sure about these. Many be one and the same as phyto-oestrogens,
        !           503: plant mimics of the female sex hormone. Intake is believed to control
        !           504: symptoms of menopause.
        !           505: 
        !           506: @end table
        !           507: 
        !           508: @node GNU Free Documentation License
        !           509: @chapter GNU Free Documentation License
        !           510: @anchor{#gfdl}
        !           511: @include gfdl.texi
        !           512: 
        !           513: @node Bibliography
        !           514: @chapter Bibliography
        !           515: @anchor{#bibliography}
        !           516: 
        !           517: Robert Bateman, Hamlyn, @emph{Every Boy's Handbook}, 1960.
        !           518: David Bender and Arnold Bender, Oxford, @emph{Nutrition: A reference
        !           519: handbook}, 1997.
        !           520: 
        !           521: Stephen G. Chancy, Wiley-Liss, @emph{Principles of Nutrition I & II},
        !           522: 1997.
        !           523: 
        !           524: @emph{Textbook of Biochemistry}, Edited by Thomas Devlin.
        !           525: Lubert Stryer, W. H. Freeman, @emph{Biochemistry, 4th ed.}, 1995.
        !           526: 
        !           527: U.S. Department of Agriculture, Agricultural Research Service,
        !           528: @emph{@uref{http://www.ars.usda.gov/ba/bhnrc/ndl,@emph{Nutrient Database
        !           529: of Standard Reference, Relase 21}}} , 2008.
        !           530: 
        !           531: @bye

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